PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989167.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 259aa    MW: 30571.9 Da    PI: 8.5748
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.82.4e-26801792102
                     HHHHHHHHHC..TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeile..deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                     Fl k+y+++e  +e+ ++++sw+e gn fvv+ ++e   ++Lp+yFkh+nf+SF+RQLn+Y      + ++ +k+++k weFkh++ +kg+k+ll
  XP_024989167.1  80 FLLKTYDLVEegEENRRRVVSWNEVGNGFVVWSPSE---QMLPRYFKHNNFSSFIRQLNTYHLCIFYNLQGFKKTSSKRWEFKHEKIQKGHKHLL 171
                     9*********66678899***************975...89****************************9999999******************* PP

                     XXXXXXXX CS
    HSF_DNA-bind  95 ekikrkks 102
                      +i rkk 
  XP_024989167.1 172 MEIIRKKC 179
                     *****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MMIVETEYRD SALRKVTKLR EKFARVEEET ETERKSRTYL EARQAVALAE QATLSAHFSA  60
FMWQSGYPES RFPAPAPAPF LLKTYDLVEE GEENRRRVVS WNEVGNGFVV WSPSEQMLPR  120
YFKHNNFSSF IRQLNTYHLC IFYNLQGFKK TSSKRWEFKH EKIQKGHKHL LMEIIRKKCE  180
ASGFPACLKP ETPSSASSIE DQESMLLLME ENKNLKRETM ELQMEIQHMK SLEIKLTDCV  240
SQYMGSTTNH QYQYLTQRW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-26HSF family protein