PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989224.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 381aa    MW: 41397.1 Da    PI: 9.7959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-05144166223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C++Cg+ F  +  L+ H  + H
  XP_024989224.1 144 VCHKCGEQFVKWGALEFHHLSkH 166
                     8*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MPAVWFSLRR SMHCQSGPAD VHDPNFQKKN LSKIVTKTKK SSPSTGGKSG CSRSLANLKD  60
VIHGSKRHME ERPSTMGTTT TTTNASPRSI GSSELLNPIA HEVVLSNSNF ELKITGFGSL  120
QDGTGGGGGG GGGGGEGRGV FGMVCHKCGE QFVKWGALEF HHLSKHAVTE LNEGDSSRKI  180
VELIYKTSWS KSHTNSGGIE RILKVHNMQR TLSEFEEHRE TVKVRASKLQ KKHPRCLADG  240
NELLRFHGTL VECNLGLNGS SSLCQSTNCN VCQILRHGFS IKKNGNNKNV VGSVFTTSTS  300
QRAFEAIDVN NGSNLRKALI VCRVIAGRVH KPLENIQELA NQSGFDSLAG KVGIYSNIEE  360
LYLLDPKSLL PCFVIICKSH M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-107C2H2 family protein