PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989404.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23348.6 Da    PI: 8.5897
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.2e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqvtfskRr g+ KKA  LSvLCd+++av++fss+gklyey+s
  XP_024989404.1  9 KRIEDKSSRQVTFSKRRSGLNKKARQLSVLCDVDIAVVVFSSRGKLYEYCS 59
                    79***********************************************96 PP
2K-box42.92.1e-151201734598
           K-box  45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +Ls+ ++ qLe+++  +l +iRs+K++l+++ i++l +ke++l ee++++++++
  XP_024989404.1 120 DLSVPDMTQLEEEISAALMHIRSRKTQLMMKYISTLHEKERKLTEETEEIKQQV 173
                     79************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MGRRKLEMKR IEDKSSRQVT FSKRRSGLNK KARQLSVLCD VDIAVVVFSS RGKLYEYCSG  60
RTDSVGLILS RYQKSCLQAE ERTTREGGSS DTGFRNQCSR FQTCKELLQS VERLVEEPCD  120
LSVPDMTQLE EEISAALMHI RSRKTQLMMK YISTLHEKER KLTEETEEIK QQVVLAKQND  180
DGGGGVNDLA TNQTNSPQLF TLPLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.22e-33MIKC_MADS family protein