PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989406.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 172aa MW: 19921.8 Da PI: 9.0521

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.7	2.3e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRr g+ KKA LSvLCd+++av++fss+gklyey+s XP_024989406.1 9 KRIEDKSSRQVTFSKRRSGLNKKARQLSVLCDVDIAVVVFSSRGKLYEYCS 59 79***********************************************96 PP
2	K-box	41.3	6.7e-15	119	172	44	97
K-box 44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +Ls+ ++ qLe+++ +l +iRs+K++l+++ i++l +ke++l ee+++++++ XP_024989406.1 119 CDLSVPDMTQLEEEISAALMHIRSRKTQLMMKYISTLHEKERKLTEETEEIKQQ 172 589*********************************************999885 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MGRRKLEMKR IEDKSSRQVT FSKRRSGLNK KARQLSVLCD VDIAVVVFSS RGKLYEYCSG 60 RTDSVGLILS RYQKSCLQAE ERTTREGGSS DTGFRNQCSR FQTCKELLQS VERLVEEPCD 120 LSVPDMTQLE EEISAALMHI RSRKTQLMMK YISTLHEKER KLTEETEEIK QQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10140.2	3e-34	MIKC_MADS family protein