PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989505.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 329aa MW: 37031.5 Da PI: 8.0182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	45.9	9.2e-15	253	277	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd C+FaHg XP_024989505.1 253 KTELCNKWQQTGACPYGDHCQFAHG 277 9***********************8 PP
2	zf-CCCH	18	5.3e-06	290	314	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H XP_024989505.1 290 YKTEVCRMVLAGDPCPYGHRCHFRH 314 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MQNYTDFPYS GDADSKLWSS FIEQSDGGVY DDYDASLYSS IFPTSTPPHH FSVTSNTTTL 60 PLPPIVVDYS RRHSLDFAPF QDLIDRRNWC LSNLRLTAKE AEALRQENVN LQMANSELNK 120 QLSHLQQQAA SASTLQNYAN ATIFPSVNSV VDCFGRMRIG DKGTPATDKR AARGVENVDP 180 IKKTEVERVK LPKSISVRSN GYLKTVQAGD GSAGRARSAD RVKAASDTQR VYVRGKKEEE 240 PLELQVYNQG MTKTELCNKW QQTGACPYGD HCQFAHGIEE LRPVIRHPRY KTEVCRMVLA 300 GDPCPYGHRC HFRHALTEEE KLMSRHINS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-64	C3H family protein