PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989521.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 344aa    MW: 37905.1 Da    PI: 4.6527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989521.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19120169154
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     s+y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA +a++  ++++e
  XP_024989521.1 120 SKYRGVRQRK-WGKWAAEIRDpF-----KqRRVWLGTYNTAEEASRAYEIKKLEFE 169
                     89*******9.**********66.....34*******************9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MNHESPCSKK SRSRAMFMDP NKPLRRIRVI CYDPDLTDSS DDDEPNKKPY GSKRIVREIT  60
IPVGHGGVPV AAGGWTETGT TKETETESSC QDSNNGEKSS GKRKRVLTRN SGQPRPASAS  120
KYRGVRQRKW GKWAAEIRDP FKQRRVWLGT YNTAEEASRA YEIKKLEFEA MAEASKGGSN  180
NVKNTTGKTI SSAAVSQPPK PAVSEESVGV ISHNSPLSVL EPETSSISKK INDSTAASQT  240
SNGETKIEAP STVMSSVVEE ALTLAEIGEG LDMKLELDSM FLDDFGPPLD GFGDLDDFQF  300
CGFEDEEACE LPDWDFEELN PEEVAWMNTL RVDEQQQPLN IACL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.11e-25ERF family protein