PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989583.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 745aa    MW: 83456.8 Da    PI: 7.1786
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.41.1e-1163737423374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lL  cA+ v+++d++ ++ lL+r++e+asp+gd mqRla+yf  +L+ar+a+s++ +ykal +++ts    +++l+a++lf  ++P+ k+sh++
  XP_024989583.1 373 ILLSLCAQSVAANDQRGVTDLLKRIREHASPTGDGMQRLAHYFCAGLEARMAGSGTVIYKALLSRPTS---AVDVLKAYHLFLGIFPFTKLSHFV 464
                     57889**************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      N++I++a+++++r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p +g   ++++eetg rLa++Ae++gvpf+f++ +a+++e+++
  XP_024989583.1 465 SNKTIMRAAQNKKRLHIIDFGILYGFQWPCLIQRLSTRPGGPPELRITGIDFPCPGfrPSQRVEETGCRLANYAETFGVPFKFKA-IAQKWETIK 558
                     *****************************************************99999***************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L+++++E+l+Vn++++  +llde+v ++s+r+evL+l+++++P++++    + ++ns+ F++rf eal ++s+lfd lea+++++++er+ +
  XP_024989583.1 559 MADLELDNNETLVVNCAYRFRNLLDETVMVHSPRNEVLDLIRKMNPEIFIQGVVNGSYNSPFFVTRFREALFFFSSLFDLLEATVASDTQERMLI 653
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ l gre++nv+aceg er+er et+++W+ r ++aGF+++p++e++ k ak   r  + + ++++e+ ++ ++gWk+r L+++S+W+
  XP_024989583.1 654 EKTLWGREAMNVIACEGGERIERPETYKQWQVRNQRAGFRQIPFDEEILKMAKDRARSGYHKDFMIDEDGHWTLQGWKGRILYAISSWK 742
                     **********************************************************99888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    
MFMDGRVNAD YGLLNLKAMK CNESASILSD QNFLNAINLN DSFIDLNSMH RPTRLLDSGP  60
SKRSSPSALK DEGDLHEDSD FSDLVLKYIN QMLMEEDIEE KSCMLQESAA LHAAEKSFYD  120
ALMVKERPSN ASHLTVPFNS TKSKDAVAES LTCFGGNSSI GGTDFRFDVS GSSLLPSALI  180
NFDSQSRFQP SYSSLSSTSS VVDVFVDSPV STLSFPDMFC DGRSTVQFQK GLGDASRFLP  240
SDDGILDYMD TGVLLGKDQK DDSYAVVVKV EKEHKISSIP DGSRGKKIRH SKDLLEDGRS  300
SKQSAVYIEP HVRSKMFDEV LLCDEGKTNS AQCEFVRNGV TNVQQKGQPK GSNGVKARGK  360
NQGGKKDAVD LRILLSLCAQ SVAANDQRGV TDLLKRIREH ASPTGDGMQR LAHYFCAGLE  420
ARMAGSGTVI YKALLSRPTS AVDVLKAYHL FLGIFPFTKL SHFVSNKTIM RAAQNKKRLH  480
IIDFGILYGF QWPCLIQRLS TRPGGPPELR ITGIDFPCPG FRPSQRVEET GCRLANYAET  540
FGVPFKFKAI AQKWETIKMA DLELDNNETL VVNCAYRFRN LLDETVMVHS PRNEVLDLIR  600
KMNPEIFIQG VVNGSYNSPF FVTRFREALF FFSSLFDLLE ATVASDTQER MLIEKTLWGR  660
EAMNVIACEG GERIERPETY KQWQVRNQRA GFRQIPFDEE ILKMAKDRAR SGYHKDFMID  720
EDGHWTLQGW KGRILYAISS WKPAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein