PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989584.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 686aa    MW: 77206.9 Da    PI: 7.7086
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.79e-1173146833374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lL  cA+ v+++d++ ++ lL+r++e+asp+gd mqRla+yf  +L+ar+a+s++ +ykal +++ts    +++l+a++lf  ++P+ k+sh++
  XP_024989584.1 314 ILLSLCAQSVAANDQRGVTDLLKRIREHASPTGDGMQRLAHYFCAGLEARMAGSGTVIYKALLSRPTS---AVDVLKAYHLFLGIFPFTKLSHFV 405
                     57889**************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      N++I++a+++++r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p +g   ++++eetg rLa++Ae++gvpf+f++ +a+++e+++
  XP_024989584.1 406 SNKTIMRAAQNKKRLHIIDFGILYGFQWPCLIQRLSTRPGGPPELRITGIDFPCPGfrPSQRVEETGCRLANYAETFGVPFKFKA-IAQKWETIK 499
                     *****************************************************99999***************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L+++++E+l+Vn++++  +llde+v ++s+r+evL+l+++++P++++    + ++ns+ F++rf eal ++s+lfd lea+++++++er+ +
  XP_024989584.1 500 MADLELDNNETLVVNCAYRFRNLLDETVMVHSPRNEVLDLIRKMNPEIFIQGVVNGSYNSPFFVTRFREALFFFSSLFDLLEATVASDTQERMLI 594
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ l gre++nv+aceg er+er et+++W+ r ++aGF+++p++e++ k ak   r  + + ++++e+ ++ ++gWk+r L+++S+W+
  XP_024989584.1 595 EKTLWGREAMNVIACEGGERIERPETYKQWQVRNQRAGFRQIPFDEEILKMAKDRARSGYHKDFMIDEDGHWTLQGWKGRILYAISSWK 683
                     **********************************************************99888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MFMDGRVNAD YGLLNLKAMK CNESASILSD QNFLNAINLN DSFIDLNSMH RPTRLLDSGP  60
SKRSSPSALK DEGDLHEDSD FSDLVLKYIN QMLMEEDIEE KSCMLQESAA LHAAEKSFYD  120
ALMVKERPSN ASHLTVPFNS TKSKDAVAES LTCFGGNSSI GGTDFRFDFQ KGLGDASRFL  180
PSDDGILDYM DTGVLLGKDQ KDDSYAVVVK VEKEHKISSI PDGSRGKKIR HSKDLLEDGR  240
SSKQSAVYIE PHVRSKMFDE VLLCDEGKTN SAQCEFVRNG VTNVQQKGQP KGSNGVKARG  300
KNQGGKKDAV DLRILLSLCA QSVAANDQRG VTDLLKRIRE HASPTGDGMQ RLAHYFCAGL  360
EARMAGSGTV IYKALLSRPT SAVDVLKAYH LFLGIFPFTK LSHFVSNKTI MRAAQNKKRL  420
HIIDFGILYG FQWPCLIQRL STRPGGPPEL RITGIDFPCP GFRPSQRVEE TGCRLANYAE  480
TFGVPFKFKA IAQKWETIKM ADLELDNNET LVVNCAYRFR NLLDETVMVH SPRNEVLDLI  540
RKMNPEIFIQ GVVNGSYNSP FFVTRFREAL FFFSSLFDLL EATVASDTQE RMLIEKTLWG  600
REAMNVIACE GGERIERPET YKQWQVRNQR AGFRQIPFDE EILKMAKDRA RSGYHKDFMI  660
DEDGHWTLQG WKGRILYAIS SWKPAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein