PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989627.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 382aa MW: 43800 Da PI: 7.2129

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	80	102	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_024989627.1 80 CSyeGCGKTFIDAGALRKHSHIH 102 77779**************7766 PP
2	zf-C2H2	15	7.2e-05	107	131	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ +Cgk F ++s LkrH H XP_024989627.1 107 YICHyeNCGKKFLDSSKLKRHFLIH 131 89*******************8877 PP
3	zf-C2H2	20.7	1.1e-06	137	161	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nL++H++tH XP_024989627.1 137 FICPheGCGKAFSLDFNLRSHMKTH 161 78**********************9 PP
4	zf-C2H2	15.1	6.6e-05	167	191	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H XP_024989627.1 167 HICPyqECGKRYAHEYKLKNHIMSH 191 68**********************6 PP
5	zf-C2H2	13.1	0.00028	239	264	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + L+ H+r+ H XP_024989627.1 239 YACPyeGCEKAYIHEYKLNLHLRReH 264 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MEHQSFHNLF ERRPLIKSKT PAVKWFKEWV PQDVVATGGK CFVMKWVTEA QMKAMKEKSK 60 NPEAVLEPEP EPTTEVLFLC SYEGCGKTFI DAGALRKHSH IHGERQYICH YENCGKKFLD 120 SSKLKRHFLI HTGERDFICP HEGCGKAFSL DFNLRSHMKT HSQENYHICP YQECGKRYAH 180 EYKLKNHIMS HHEKQNSNNN LIEVAPKYVQ VQPVEKPPPK PPKAAATATY ATASSDRPYA 240 CPYEGCEKAY IHEYKLNLHL RREHPGHFPD DNPKNARNKN NDTDMDAGSD HEGYAVKRGN 300 AKSHKQNRPK PTIKLPPAKA VKRKPPPPAA AAKKQPWPVV KEVQEEEDSE ETEEDRGGDN 360 GEDGWRYGGD DNDDDEETEY ED

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MEHQSFHNLF ERRPLIKSKT PAVKWFKEWV PQDVVATGGK CFVMKWVTEA QMKAMKEKSK  60
NPEAVLEPEP EPTTEVLFLC SYEGCGKTFI DAGALRKHSH IHGERQYICH YENCGKKFLD  120
SSKLKRHFLI HTGERDFICP HEGCGKAFSL DFNLRSHMKT HSQENYHICP YQECGKRYAH  180
EYKLKNHIMS HHEKQNSNNN LIEVAPKYVQ VQPVEKPPPK PPKAAATATY ATASSDRPYA  240
CPYEGCEKAY IHEYKLNLHL RREHPGHFPD DNPKNARNKN NDTDMDAGSD HEGYAVKRGN  300
AKSHKQNRPK PTIKLPPAKA VKRKPPPPAA AAKKQPWPVV KEVQEEEDSE ETEEDRGGDN  360
GEDGWRYGGD DNDDDEETEY ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-124	C2H2 family protein