PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989714.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 209aa    MW: 24693.4 Da    PI: 5.4708
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989714.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-192879556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++f++eq++ Le+lF++++++  +++ e+A++lgL  rqV +WFqNrRa++k
  XP_024989714.1 28 RRFSDEQIKSLESLFKMENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWK 79
                    58*************************************************9 PP
2HD-ZIP_I/II122.12.8e-3926117293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     + rr+s+eq+k+LE+ F++e+kLep++K e+areLgl+prqva+WFqnrRAR+k+kq+E+dy++Lk+ yd+l+++ e+L++e+++L ++l++
  XP_024989714.1  26 NNRRFSDEQIKSLESLFKMENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWKSKQVEQDYTTLKADYDSLSDRFESLKNEKHALLQQLRN 117
                     579************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MLGDAQVLKK KNKNKNKNNN NNNNNNNRRF SDEQIKSLES LFKMENKLEP RKKLEMAREL  60
GLHPRQVAIW FQNRRARWKS KQVEQDYTTL KADYDSLSDR FESLKNEKHA LLQQLRNLCN  120
QLKEPHEGSK LDLESGSENG DTNLELNSSR PLEQDMAIYS DEDDLRKHKQ KQELDENIME  180
MEEAQEIVSN FDLGSLFDQF SCSSNWWEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17482RRARWKSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-36HD-ZIP family protein