PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989833.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 336aa MW: 37924.1 Da PI: 9.7944

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989833.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	8.1e-18	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++q+G g+W++ +++ g++R++k+c++rw +yl XP_024989833.1 30 KGPWTPEEDRKLLSYIQQYGHGSWRSLPAKAGLKRCGKSCRLRWTNYL 77 79********************************************97 PP
2	Myb_DNA-binding	55.5	1.3e-17	83	127	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+ +++++++lG++ W+tIa++++ +Rt++++k++w+++ XP_024989833.1 83 RGKFSLEEERTIIQLHALLGNR-WSTIAAHLP-RRTDNEIKNHWNSH 127 89******************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGRSGRSEKK KKQNNNSNSN MVGLGVGVKK GPWTPEEDRK LLSYIQQYGH GSWRSLPAKA 60 GLKRCGKSCR LRWTNYLRPD IKRGKFSLEE ERTIIQLHAL LGNRWSTIAA HLPRRTDNEI 120 KNHWNSHIKK RMTKMGIDPM THKPKSGTQL LGSNLNHMAQ WEAARLEAEA RLVQKPKYYP 180 NPPPYLISPS STQELHKAPT MVPPPYLPCL DVLKVWQGTL WSNYSINNES LQSLISTSNV 240 SENISLVTPT TMTEISHVES KSSCDQGVTT KHNDQVKTQM GPFEEFEYPN DATFIGADPL 300 RSPDFWEEFV DLLDGGWNSL TSNLAMIASP PASPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	7e-76	MYB family protein