PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989883.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 182aa    MW: 20724.4 Da    PI: 8.8338
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++v  +G g+W+tI++  g+ R+ k+c+ rw++yl
   XP_024989883.1 15 KGAWSKEEDRKLINYVISHGEGCWATIPQAAGLLRCSKSCRKRWLNYL 62
                     79******************************99************97 PP
2Myb_DNA-binding49.69.2e-1664109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_024989883.1  64 RGNFAEDEQDLIIRLHALLGNR-WSLIAGRLP-GRTANEIKNYWNSHL 109
                      8999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MRKPCCDHNK HDMNKGAWSK EEDRKLINYV ISHGEGCWAT IPQAAGLLRC SKSCRKRWLN  60
YLKRGNFAED EQDLIIRLHA LLGNRWSLIA GRLPGRTANE IKNYWNSHLK KKLENMGIDP  120
NNHRIPQGIS FLQGTKSEAE IEQLHSSDIN SGSNCDQESS SSTRPADNLT METSFPTHLP  180
KQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-63MYB family protein