PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989965.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25119.1 Da    PI: 10.5798
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.4e-203072749
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    sn  vtfskRr g++KKA+EL++LC++e+av++fs+  k++ +
  XP_024989965.1 30 SNLLVTFSKRRSGLFKKASELCILCGVEIAVVVFSPGKKVFSF 72
                    6778********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MKNSSQPPMI TARKSKGRQK IQMKRMVKVS NLLVTFSKRR SGLFKKASEL CILCGVEIAV  60
VVFSPGKKVF SFGHPSVETI VDRFLTQNPP PNSSTSQLVE AHRNANIHQL NRQLTCVNGQ  120
LEIEKNRSEE LSKIRKVGQD NHWWEAPIEN LGLQELEQLK VAMEVLKKNI GEQAKRHLAE  180
VANPMPIVPI SSSMGGSGDS SEVMKGSGLG LSMTPNGFVL GYAHFSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-58M-type_MADS family protein