PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990180.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 336aa MW: 38301.8 Da PI: 6.4186

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G+g+W+t ++ g+ R++k+c++rw +yl XP_024990180.1 14 KGPWTQEEDLKLLEYIQVHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.9	4e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_024990180.1 67 RGRFSFEEEETIIQLHSVLGNK-WSSIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGRSPCCDKN GLKKGPWTQE EDLKLLEYIQ VHGPGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS SIAARLPGRT DNEIKNYWNT HIRKRLLRNG 120 IDPVTHSPRL DLLDISSMLN SAQLNLSNLL NLQTLVNPEV LRLATLLASS SNQENQELFL 180 NNQMNPMNQT LDQQLPNCSS IAPRLSSTQL LSQESHSQYF SPNFVNMNGQ IVEENVMSPC 240 LTHNHVILPS QSDQYRAQAS ENSSVQKSNI EHNYNHTSQN FNFDSVLSTP MSSPTPLNSS 300 STFVNSSSTE DERETYCSMF KFEIPESFEF DDFINS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	2e-95	MYB family protein