PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990225.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 186aa    MW: 20836.3 Da    PI: 9.2889
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.6e-33107165159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H h+
  XP_024990225.1 107 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNVKKQVQRLSKDEGVVVTTYEGTHSHP 165
                     59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MKNYATLFPS SSTSTSTSVS SHLSLSLMND YSPLAYTNDS YDHDQLPLFE KSLNCSSDQE  60
IVVVSPTTSS GLGNSTSGSG KISVKKGEKK IKKPKCAFQT RSQVDILDDG YRWRKYGQKA  120
VKNNKFPRSY YRCTHHGCNV KKQVQRLSKD EGVVVTTYEG THSHPIEKST DNFEHILTQM  180
QIYSSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-57WRKY family protein