PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990296.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

RAV

Protein Properties

Length: 342aa MW: 38245.1 Da PI: 9.4714

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990296.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.8	4.8e-12	53	101	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f + eAaka++ a ++++g XP_024990296.1 53 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEHEAAKAYDTAVQRFRG 101 689*9788.8*****3.....5******99**********998 PP
2	B3	99.7	1.7e-31	178	277	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed ++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ +++ XP_024990296.1 178 FEKTVTPSDVGKLNRLVIPKQHAEKHfplqNGSTSKGVLLHFEDIGMKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPDKQ 272 99**************************888899*************************************************87667776 PP .EEEE CS B3 92 lvvkv 96 l++ + XP_024990296.1 273 LYIDW 277 77665 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MDGSCTDDQS TTTETTSTVA APVTTPPLIG SGGSVVLDLE GGLEAESRKL PSSRFKGVVP 60 QPNGRWGAQI YEKHQRVWLG TFNEEHEAAK AYDTAVQRFR GRDAVTNFKP LPADTDEAGL 120 EASFLNSHSK AEIVDMLRKH TYNDELEQSK RSCSLHKTPF TDGFRSGHQL VNAREQLFEK 180 TVTPSDVGKL NRLVIPKQHA EKHFPLQNGS TSKGVLLHFE DIGMKVWRFR YSYWNSSQSY 240 VLTKGWSRFV KEKNLKAGDI VSFQRSTGPD KQLYIDWKVK NGSGNTNQKP VHPVQMFRLF 300 GVNIFSATTH GVDSTCNGKR SNIEMELLGL GNCKKQRIID PL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MDGSCTDDQS TTTETTSTVA APVTTPPLIG SGGSVVLDLE GGLEAESRKL PSSRFKGVVP  60
QPNGRWGAQI YEKHQRVWLG TFNEEHEAAK AYDTAVQRFR GRDAVTNFKP LPADTDEAGL  120
EASFLNSHSK AEIVDMLRKH TYNDELEQSK RSCSLHKTPF TDGFRSGHQL VNAREQLFEK  180
TVTPSDVGKL NRLVIPKQHA EKHFPLQNGS TSKGVLLHFE DIGMKVWRFR YSYWNSSQSY  240
VLTKGWSRFV KEKNLKAGDI VSFQRSTGPD KQLYIDWKVK NGSGNTNQKP VHPVQMFRLF  300
GVNIFSATTH GVDSTCNGKR SNIEMELLGL GNCKKQRIID PL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-140	RAV family protein