PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990401.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 499aa MW: 54987.1 Da PI: 9.855

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024990401.1 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	12.8	0.00037	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_024990401.1 147 WKCEKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MMSGQMFPLP LQDHHHHHHQ PPPSAAAHEA NPNPKPLSNI KKKRNLPGTP DPDAEVMALS 60 PKSLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKEPIKKK VYICPEKSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYKCDCGT 180 LFSRKDSFIT HRAFCDALAE ESVRLNSVTS NSLGLKNEGL NESVINPNHH PSFSHGFSGI 240 TQFGSGFRPD FGDQNKPRLS LWLDQANSQL NLSPIDQMSM NSNLYMSSSS AGLADMVNVF 300 GNSSSMGNFT NPHQVPSLSL TPLTEGLKDE TLASMYSINQ THQSQSESTG PMSATALLQK 360 AAQMGSTRSN PSIFGSSFGL MNSSSTASNT AVSLVNNTMT PLPHITAQLQ VSTAMNNNSS 420 NSSPQGSNID HQQMIMPRNE TMPRLKMMQR SFSGVDNGLT RDFLGMGGEG GRPLLPQDLV 480 KFASYGSTMG SMRQFATNN

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MMSGQMFPLP LQDHHHHHHQ PPPSAAAHEA NPNPKPLSNI KKKRNLPGTP DPDAEVMALS  60
PKSLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKEPIKKK VYICPEKSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYKCDCGT  180
LFSRKDSFIT HRAFCDALAE ESVRLNSVTS NSLGLKNEGL NESVINPNHH PSFSHGFSGI  240
TQFGSGFRPD FGDQNKPRLS LWLDQANSQL NLSPIDQMSM NSNLYMSSSS AGLADMVNVF  300
GNSSSMGNFT NPHQVPSLSL TPLTEGLKDE TLASMYSINQ THQSQSESTG PMSATALLQK  360
AAQMGSTRSN PSIFGSSFGL MNSSSTASNT AVSLVNNTMT PLPHITAQLQ VSTAMNNNSS  420
NSSPQGSNID HQQMIMPRNE TMPRLKMMQR SFSGVDNGLT RDFLGMGGEG GRPLLPQDLV  480
KFASYGSTMG SMRQFATNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-104	C2H2 family protein