PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990436.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YC
Protein Properties Length: 131aa    MW: 14672.9 Da    PI: 10.4366
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.51.2e-175931097
           NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                     e++t++ +  lP  r+k+i+k d+++++i +ea  ++s a elf+  l+ +s   a e+kr+t+k   +  av+r + + dfl+d  p
  XP_024990436.1  5 EETQTEVVQSGLPAGRVKRIMKLDKEINKINSEALFVISSATELFVKFLAEKSSEVAIEKKRKTIKLEHLRIAVKRHQpTADFLLDSLP 93
                    688999********************************************************************9976489*****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MAEGEETQTE VVQSGLPAGR VKRIMKLDKE INKINSEALF VISSATELFV KFLAEKSSEV  60
AIEKKRKTIK LEHLRIAVKR HQPTADFLLD SLPMPPPAQI PTKTDRSRRS SDNDSVPAGT  120
RRIDSFFQKG P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-47NF-YC family protein