PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990504.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 225aa MW: 24511.8 Da PI: 6.493

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.4	2.1e-42	67	166	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+aela XP_024990504.1 67 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESQRVDAVSSMVYEANARLRDPVYGCAGAICQLQKQVSELQAELA 161 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024990504.1 162 KAQAE 166 *9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MEYSGDRSSG ATSPMAISTA VPSSFSHSHS PKTSNNSSSS QLSPTSVLTH PPPSTPSSPP 60 HPVVLSPCAA CKILRRRCVE KCVLAPYFPP TEPLKFTIAH RVFGASNIIK LLQELPESQR 120 VDAVSSMVYE ANARLRDPVY GCAGAICQLQ KQVSELQAEL AKAQAEVLNM QCQQSNLLSL 180 ICMEMDQQHV SPSPPQPPQQ QQPLYDNLNF YSDDANLGSV FELWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-61	LBD family protein