PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990539.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 230aa MW: 25412.7 Da PI: 4.6523

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.1	4.3e-29	138	196	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YY+C+++ C ++k+ve+s+ dp+v+++ Y+geH h+ XP_024990539.1 138 NDTWAWRKYGQKPIKGSPFPRNYYKCSTTkACGARKQVEQSHMDPTVFIVSYSGEHIHP 196 8***********************99889*************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MDDEWDLYAV VRSCTTNSTD AATSGNVTVD DYEDGYDYNM ETVADMINPY SYSNSGDNPS 60 EGLEEVYKEG CSQRLPTTTT TTITTTTTTT GGFFDEQEQP SVSFDASDHS LSNESPSKKR 120 KNQQKKMVVE LTQEELCNDT WAWRKYGQKP IKGSPFPRNY YKCSTTKACG ARKQVEQSHM 180 DPTVFIVSYS GEHIHPRPTH RSPLAGSTRS NKFTPPPPDL DAAGGGDGGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	4e-47	WRKY family protein