PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990540.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 344aa    MW: 38707.2 Da    PI: 4.863
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-20121170255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa+ +++a+ +l+g
  XP_024990540.1 121 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAARVYDNAAIRLRG 170
                     89*******.**********82....35*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MDGCSVLSPI KQTEHKRVIT MVVPAMTKKL SGQQKSPCPR LVRISMTDPY ATDSSGDEDD  60
EHFRRWRVKK YVNEINIQTS CKTTMTPVNG KKTTTGNRES ALEAKQKPMK TKRTPAGNVR  120
KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAARV YDNAAIRLRG PGALTNFVMP  180
PVLENPPPVN VTSTSDHDSS EESHNLLSPT SVLRFDGNSN SQSRETLEPV KEAEECQSTN  240
GSCLIQELDP NVHLVVDKNG PGPFGDAPPF DFQSFDPIQF GDEVPFYNMH DDFGSLDPNQ  300
FDNFDTIPFV DDLIPDIGFE SPSTLEIENY FQDISDSILD SWFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-49ERF family protein