PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990577.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 469aa MW: 55000.2 Da PI: 9.9557

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.6	1.8e-17	1	95	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA+e+GF+vr s++k + ++g it+r +vCskeg++ ++ + +++ r+++++r gC a++k++ k + ++ev+k+ ++ nH l+ XP_024990577.1 1 MYRKYANEAGFDVRLSNKKIN-KKGCITSRFYVCSKEGRPPSKYFDsldvlpGDRRIRNSNVKRYGCGACFKIHFVKeRRQYEVYKFIEQYNHMLF 95 6************998887.7777**********9999889999899999**************99989************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MYRKYANEAG FDVRLSNKKI NKKGCITSRF YVCSKEGRPP SKYFDSLDVL PGDRRIRNSN 60 VKRYGCGACF KIHFVKERRQ YEVYKFIEQY NHMLFNKEEM RFSRSKRQLH YADHKNVFHG 120 SSSKVGVTKS HRFRKAITGG VDCSGGTVRD HQNFKRDMAY FVDNKDVQML LNVMSSRRKV 180 CPEFFFEYKC DDKKLLAIFW ADQTARSNYR EFGDAISFDA TFRTNKHAII FVPFVAIDNH 240 KKFVVVGAAL IHNESVVDYT CVLKAFVKAH GRQPRFVITD QCASMKQAIL IAFPESKHRL 300 CMWHITKKLN SKISNYLQHR TPFVSEFNKL VWNVHLAPDE FEMKWLNMMD LYGLHGDSRF 360 DELYEIRESW IPAYYKDYHM SGLIKTTSRS ESINGFFNVY AYFWHDLVIF LRSFDNAIES 420 QRTTHGSLVV TTKSTVPRLV SSCKLEAHAA EVYTRTIFFE VQKELRKAV

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MYRKYANEAG FDVRLSNKKI NKKGCITSRF YVCSKEGRPP SKYFDSLDVL PGDRRIRNSN  60
VKRYGCGACF KIHFVKERRQ YEVYKFIEQY NHMLFNKEEM RFSRSKRQLH YADHKNVFHG  120
SSSKVGVTKS HRFRKAITGG VDCSGGTVRD HQNFKRDMAY FVDNKDVQML LNVMSSRRKV  180
CPEFFFEYKC DDKKLLAIFW ADQTARSNYR EFGDAISFDA TFRTNKHAII FVPFVAIDNH  240
KKFVVVGAAL IHNESVVDYT CVLKAFVKAH GRQPRFVITD QCASMKQAIL IAFPESKHRL  300
CMWHITKKLN SKISNYLQHR TPFVSEFNKL VWNVHLAPDE FEMKWLNMMD LYGLHGDSRF  360
DELYEIRESW IPAYYKDYHM SGLIKTTSRS ESINGFFNVY AYFWHDLVIF LRSFDNAIES  420
QRTTHGSLVV TTKSTVPRLV SSCKLEAHAA EVYTRTIFFE VQKELRKAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-59	FAR1 family protein