PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990578.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 251aa    MW: 28406.5 Da    PI: 9.0957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.92e-36151435128
             NAM   5 frFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      rF Pt+ee v++yL +k++g++ ++l++vi+ v ++++ P +Lpk     ++ ++++w+fF++r++++a+g r++r+t+s yWkatg+   v+s
  XP_024990578.1  15 SRFYPTEEEXVSFYLFNKLQGQRtHDLHRVIPVVPVNDHSPCHLPKlageLCRRDTEQWFFFVPRQEREAQGGRPSRTTASXYWKATGSPAYVYS 109
                     69*******************996677788***************656653444677************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++++g+kkt+vfy+g++++ ++t+W m+eyr+
  XP_024990578.1 110 SDNKVIGVKKTMVFYEGKSQTVKRTEWKMNEYRA 143
                     ********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MAPIGNTLGN GPTNSRFYPT EEEXVSFYLF NKLQGQRTHD LHRVIPVVPV NDHSPCHLPK  60
LAGELCRRDT EQWFFFVPRQ EREAQGGRPS RTTASXYWKA TGSPAYVYSS DNKVIGVKKT  120
MVFYEGKSQT VKRTEWKMNE YRAIKKDIDN TNTSPVPKVY ILESRHELSL CRVYVVSGCT  180
RAFDRRPLGL EPTPMITYKA SQGAPSSQNT VQTYKTASPS DCSSPESSNR MVDTVGNIGL  240
VPEWEWQHLT G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-78NAC family protein