PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990579.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 288aa MW: 33031.6 Da PI: 6.6376

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.7	2.8e-18	121	171	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +grWvAeI+dp + r+r +lg+++t eeAa +++a+ kl+g+ XP_024990579.1 121 KFRGVRKRR-WGRWVAEIMDPAT---RQRLWLGTYDTSEEAAMVYDNAAIKLRGA 171 89**887.******954...4************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MEDCFVLPPI KQTEHKRRIT MEVPAISEKF SDQEELPFSK LIKISMTDPY ATDFSGDEDD 60 YIFGRWRVKK YVNEINIQPL GKATMMPLNG NMTTTRNSPF VVDSKQKAMK KKKSPEGNVR 120 KFRGVRKRRW GRWVAEIMDP ATRQRLWLGT YDTSEEAAMV YDNAAIKLRG AGAITNFVMP 180 TVLENPPPTN VTSMSDHHPN RKSLKLPLAD APPLDYQSFD SIQLGDEVTS FNMHHDFRSI 240 NPKQFDDFGI TPIAHDFIHE TGCGSPSTLK IDNYFEEILD STLDLWFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	129	KKKKSPEGNVRKFRGVRKRR
2	111	130	KKKKSPEGNVRKFRGVRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	2e-28	ERF family protein