PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990610.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 667aa MW: 77398.1 Da PI: 9.6794

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.1	3.2e-14	35	120	1	80
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtk 80 k+Y++YA+e+GF+vr s++k + + g+it+r +vCskeg+++++ + ++ r+++ +r gC a+lk+++ + +++ev++ XP_024990610.1 35 KMYRKYANEAGFDVRLSNKKIN-KLGRITSRFYVCSKEGRPQSKYFDsldvlpGGRTIRNSNIKRSGCGACLKIHLVNePNQYEVYN 120 68************998887.7777************9999999999899999***************99889999976 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MGETSTGSKY WVPSVDVKYK PKVGDSFESV ESAEKMYRKY ANEAGFDVRL SNKKINKLGR 60 ITSRFYVCSK EGRPQSKYFD SLDVLPGGRT IRNSNIKRSG CGACLKIHLV NEPNQYEVYN 120 SKVGITKSHR FMKAVKGVVD SSGGTVRDHQ NFKRDMXYFV GNKDAQMLLN VMDNRRKVCP 180 EFFFEYKCDD KELLAIFWAD ETARSNYREF GDAISFDATF RTNKHAMIFV PFVAIDNHKK 240 SVVVGAALIH NESVVDYTWV LKAFLKAHGR QPRFVITDQC ASMKQAIPIA FPESRHRLCM 300 WHITKKVKSK ISNHLQHRTQ FVSEFNKLVW NVHLGPNEFE MQWNNLIDFY GLRGDPWFDD 360 LYNIRESWIL AYYKDFHMSG LMKTTSRSES INAFFNVYAH FWHDLVVFLR SFDNAIESQR 420 ATHGSLEVTT KSTIPRLVSP CKLEAHAAEV YTRTIFFEIQ KELRKAVWLC GWDGFTDNGE 480 TRVYIITHKN KASKVTTKYT VMLNDEVDRI PDKYILRRWR RDLVPVEWLP AXFRYGEVDA 540 EKERLMSLAY SYFERILGRV RNEKDILTRF VDQLEQWDSK VDIELPLQSH TEETTASIKE 600 FLGVSQPETV DVLPPTGIRN KGCGTGKRLI SAAEKAISNR KKQKRKCRLC GQMATHDSRN 660 CPKRDYI

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MGETSTGSKY WVPSVDVKYK PKVGDSFESV ESAEKMYRKY ANEAGFDVRL SNKKINKLGR  60
ITSRFYVCSK EGRPQSKYFD SLDVLPGGRT IRNSNIKRSG CGACLKIHLV NEPNQYEVYN  120
SKVGITKSHR FMKAVKGVVD SSGGTVRDHQ NFKRDMXYFV GNKDAQMLLN VMDNRRKVCP  180
EFFFEYKCDD KELLAIFWAD ETARSNYREF GDAISFDATF RTNKHAMIFV PFVAIDNHKK  240
SVVVGAALIH NESVVDYTWV LKAFLKAHGR QPRFVITDQC ASMKQAIPIA FPESRHRLCM  300
WHITKKVKSK ISNHLQHRTQ FVSEFNKLVW NVHLGPNEFE MQWNNLIDFY GLRGDPWFDD  360
LYNIRESWIL AYYKDFHMSG LMKTTSRSES INAFFNVYAH FWHDLVVFLR SFDNAIESQR  420
ATHGSLEVTT KSTIPRLVSP CKLEAHAAEV YTRTIFFEIQ KELRKAVWLC GWDGFTDNGE  480
TRVYIITHKN KASKVTTKYT VMLNDEVDRI PDKYILRRWR RDLVPVEWLP AXFRYGEVDA  540
EKERLMSLAY SYFERILGRV RNEKDILTRF VDQLEQWDSK VDIELPLQSH TEETTASIKE  600
FLGVSQPETV DVLPPTGIRN KGCGTGKRLI SAAEKAISNR KKQKRKCRLC GQMATHDSRN  660
CPKRDYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-60	FAR1 family protein