PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990620.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 227aa    MW: 26043.7 Da    PI: 9.122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1401.4e-43421722128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     ppG+rF Pt+eelv++yL +++++++ +l++vi+ v++y++ePw+Lp+     +k ++++w+fF+++++++ +g r++r+t+sgyWkatg+ + v
  XP_024990620.1  42 PPGYRFFPTEEELVSFYLPNELDARRDDLHRVIPVVNVYEHEPWHLPMeageLCKRDTEQWFFFVPKQEREVQGGRPSRTTASGYWKATGSPTYV 136
                     89***************************99****************645654445777************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s++++++g+kkt+vfy+g++++++kt+W mheyr+
  XP_024990620.1 137 YSSTDKVIGVKKTMVFYHGKSSTSKKTKWKMHEYRA 172
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MNRLILSSLP VSVSNPIYTH HHHPPTHRCS VLTTTMNHRL PPPGYRFFPT EEELVSFYLP  60
NELDARRDDL HRVIPVVNVY EHEPWHLPME AGELCKRDTE QWFFFVPKQE REVQGGRPSR  120
TTASGYWKAT GSPTYVYSST DKVIGVKKTM VFYHGKSSTS KKTKWKMHEY RAIKEELDST  180
NTCLIPKLQH ELSLCRVYVI SGCVRAFDRR PTGLGTHEIG GSSSLSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-73NAC family protein