PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990687.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 727aa    MW: 81806.3 Da    PI: 6.1544
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.51.4e-1143547242374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL  cA+av+++d+++a  lL++++e+asp+gd mqRla+yf  +L+ar+a+s++e+ykal +++ s    +++l+a++l+  ++P+lk+ ++
  XP_024990687.1 354 RTLLSLCAQAVAANDQRNAIDLLKQIREHASPTGDGMQRLAHYFSAGLEARMAGSGTEIYKALLSRPIS---AVDVLKAYHLYLSCCPFLKIYNF 445
                     689999*************************************************************99...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                       N++Il  +e++ ++Hi+Df+i +G+QWp++++ L++Rp+gpp+lRiTg++ p +g   ++++eetg+rLa++Ae+++vpf+f++ +a+++e++
  XP_024990687.1 446 FSNKTILHTAENKAKLHIVDFGILYGFQWPCFIHRLSTRPGGPPELRITGIDFPCPGfrPSQRVEETGSRLANYAETFNVPFKFKA-IAQKWETI 539
                     ******************************************************99999***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e+L+++++E l+Vn++++  +llde+v ++s+r++vL+l+k+++P++++    + ++n++ F +rf eal ++s+lfd++ea+++re++er+ 
  XP_024990687.1 540 TMEDLELDSDEILVVNCAYRFRNLLDETVMVDSPRNKVLNLIKKMKPDIFIQGVINGSYNAPFFITRFREALFFFSSLFDMIEANASRETQERML 634
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+ + gre++nv+aceg er+er et+++W+ r ++aGF+++pl++++ k ak   + ++   + ++e+ +++++gWk+r + ++S+W+
  XP_024990687.1 635 IEKIFWGREAMNVIACEGGERIERPETYKQWQVRNMRAGFRQLPLNQEILKLAKERGKSCYHPDFGIDEDGHWMLQGWKGRIISALSCWK 724
                     *************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MVMDGRWKED YGVLSLNALK FNGSTTVLSD QKFLNAMSLN ETFLDRNSTD HSPELPDASL  60
TSSSSNNEHD PHEDFDYSDV VFKYINQMLM EEDIEEKTCM LQESAALQAA EKSFYDALMI  120
NEPPFCNVHS TVPLYDDDGK NEISIGGYNY FGGNSFISGT GLSCDVSDYN SPLVPTVTFN  180
LDSQSISQSS YCSSSSNSCV IDGYVDSPVS IQSFSDLLGS SRSAMHFQNN SDKALTHLGT  240
NHVFGENQRE DVNTVVVKAE KEHESNSIRE ESRGKKNSYS KDLVEDGRIS KQSAVYTEPT  300
VRSKMFDDVL LCSGGNNHPQ GNFVHNGVTR VQPKGNKGKG RGKKGVKKDV VDMRTLLSLC  360
AQAVAANDQR NAIDLLKQIR EHASPTGDGM QRLAHYFSAG LEARMAGSGT EIYKALLSRP  420
ISAVDVLKAY HLYLSCCPFL KIYNFFSNKT ILHTAENKAK LHIVDFGILY GFQWPCFIHR  480
LSTRPGGPPE LRITGIDFPC PGFRPSQRVE ETGSRLANYA ETFNVPFKFK AIAQKWETIT  540
MEDLELDSDE ILVVNCAYRF RNLLDETVMV DSPRNKVLNL IKKMKPDIFI QGVINGSYNA  600
PFFITRFREA LFFFSSLFDM IEANASRETQ ERMLIEKIFW GREAMNVIAC EGGERIERPE  660
TYKQWQVRNM RAGFRQLPLN QEILKLAKER GKSCYHPDFG IDEDGHWMLQ GWKGRIISAL  720
SCWKPAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein