PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990835.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 969aa MW: 108417 Da PI: 5.902

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.5	8.9e-52	14	127	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e + rwlk+ e++ iL++fe+ +lt+e++++p+sgsl+L+n++++r+frkDG+sw++kkdg+ v E+he+LKvg+ve+l+cyYah+e np+fqrr XP_024990835.1 14 EaHIRWLKPGEVLFILQHFEESQLTHEPPQKPPSGSLFLFNKRVLRFFRKDGHSWRRKKDGRNVGEAHERLKVGNVEALNCYYAHGEVNPNFQRR 108 4488***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhyle 116 +yw+L+ ++++ivlvhy++ XP_024990835.1 109 SYWMLDPSMDHIVLVHYRD 127 ***************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence
MMTSGYNIMD LIREAHIRWL KPGEVLFILQ HFEESQLTHE PPQKPPSGSL FLFNKRVLRF 60 FRKDGHSWRR KKDGRNVGEA HERLKVGNVE ALNCYYAHGE VNPNFQRRSY WMLDPSMDHI 120 VLVHYRDITM GGHSAGPIST VSTGSSTLIQ SSNSYVTQFT QSAAAFSQFR EPYESTSSPG 180 SVEVSSDVVI KSNGTSPLTL AEVTEEIGGS PNFEIDQALQ RIREQLSLDE DNLKDIGAFY 240 SENEISNESG ITVNEQDYGG SGGMHDGSIN YTSEQYPGEY GTAHQYQQQS EGEFSITSQQ 300 TSIWDDVLIY NGNAVGDGSQ KNFVYPSDRN GVLLPQPRRD PVEEQEKYNY GYTSANNDSS 360 ILLPHELEDF KFPAYTPARN LSDSYPDFYS TMFGQGQGGM PLESASSLTI AQEQKFTIRE 420 IAPQWGYASE PTKVLVIGTF TCDLAKREWY CMFGDTEVPV EIIQEGVLCC YAPPCLPGKV 480 SLCITSGNRE SCSEIREFEY CDKPSSYIHT NQTDKKFSRS SEESLLLVRF VQMLLSDQVR 540 HKEGKTRIDL LVSSMASEDS WSQVIEALLD GSLASSNTTD WLLEELLKDK LQQWLSSRLQ 600 DESAVPALSK REQGIIHMVS GLGFGWALTP ILNSGVGVNF RDINGWTALH WAARFGREKM 660 VAELLASGAS AGAVTDPSQL DPTGKTPASI AATCGHKGLA GYLSEVSLTS HPTLKLQQSE 720 LSRNSADLEA ERTVDSISKL NLVSDEDPSL RDTLAAVRNT AQAAARIQSA FRAHSFRKRQ 780 QKESTRYATG DEYGILPSDI EGLSAASKLT FRNGNDHNAA LSIQKKYRGW KGRKDFLALR 840 QKVVKIQAHV RGHQVRKNYK VFCWAVGVVE KVVLRWRRKG VGLRGFKQEL GTLDDGEDED 900 IVKVFRKQNV DVSIDEAVSR VLSMVDSQQA RQQYRRMLQK YRQAKAEHER LESEAASTSE 960 NEELNKFIM

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence

MMTSGYNIMD LIREAHIRWL KPGEVLFILQ HFEESQLTHE PPQKPPSGSL FLFNKRVLRF  60
FRKDGHSWRR KKDGRNVGEA HERLKVGNVE ALNCYYAHGE VNPNFQRRSY WMLDPSMDHI  120
VLVHYRDITM GGHSAGPIST VSTGSSTLIQ SSNSYVTQFT QSAAAFSQFR EPYESTSSPG  180
SVEVSSDVVI KSNGTSPLTL AEVTEEIGGS PNFEIDQALQ RIREQLSLDE DNLKDIGAFY  240
SENEISNESG ITVNEQDYGG SGGMHDGSIN YTSEQYPGEY GTAHQYQQQS EGEFSITSQQ  300
TSIWDDVLIY NGNAVGDGSQ KNFVYPSDRN GVLLPQPRRD PVEEQEKYNY GYTSANNDSS  360
ILLPHELEDF KFPAYTPARN LSDSYPDFYS TMFGQGQGGM PLESASSLTI AQEQKFTIRE  420
IAPQWGYASE PTKVLVIGTF TCDLAKREWY CMFGDTEVPV EIIQEGVLCC YAPPCLPGKV  480
SLCITSGNRE SCSEIREFEY CDKPSSYIHT NQTDKKFSRS SEESLLLVRF VQMLLSDQVR  540
HKEGKTRIDL LVSSMASEDS WSQVIEALLD GSLASSNTTD WLLEELLKDK LQQWLSSRLQ  600
DESAVPALSK REQGIIHMVS GLGFGWALTP ILNSGVGVNF RDINGWTALH WAARFGREKM  660
VAELLASGAS AGAVTDPSQL DPTGKTPASI AATCGHKGLA GYLSEVSLTS HPTLKLQQSE  720
LSRNSADLEA ERTVDSISKL NLVSDEDPSL RDTLAAVRNT AQAAARIQSA FRAHSFRKRQ  780
QKESTRYATG DEYGILPSDI EGLSAASKLT FRNGNDHNAA LSIQKKYRGW KGRKDFLALR  840
QKVVKIQAHV RGHQVRKNYK VFCWAVGVVE KVVLRWRRKG VGLRGFKQEL GTLDDGEDED  900
IVKVFRKQNV DVSIDEAVSR VLSMVDSQQA RQQYRRMLQK YRQAKAEHER LESEAASTSE  960
NEELNKFIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein