PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990836.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 946aa MW: 105877 Da PI: 6.1328

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.5	8.6e-52	14	127	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e + rwlk+ e++ iL++fe+ +lt+e++++p+sgsl+L+n++++r+frkDG+sw++kkdg+ v E+he+LKvg+ve+l+cyYah+e np+fqrr XP_024990836.1 14 EaHIRWLKPGEVLFILQHFEESQLTHEPPQKPPSGSLFLFNKRVLRFFRKDGHSWRRKKDGRNVGEAHERLKVGNVEALNCYYAHGEVNPNFQRR 108 4488***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhyle 116 +yw+L+ ++++ivlvhy++ XP_024990836.1 109 SYWMLDPSMDHIVLVHYRD 127 ***************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence
MMTSGYNIMD LIREAHIRWL KPGEVLFILQ HFEESQLTHE PPQKPPSGSL FLFNKRVLRF 60 FRKDGHSWRR KKDGRNVGEA HERLKVGNVE ALNCYYAHGE VNPNFQRRSY WMLDPSMDHI 120 VLVHYRDITM GGHSAGPIST VSTGSSTLIQ SSNSYVTQFT QSAAAFSQFR EPYESTSSPG 180 SVEVSSDVVI KSNGTSPLTL AEVTEEIGGS PNFEIDQALQ RIREQLSLDE DNLKDIGAFY 240 SENEISNESG ITVNEQDYGG SGGMHDGSIN YTSEQYPGEY GTAHQYQQQS EVGDGSQKNF 300 VYPSDRNGVL LPQPRRDPVE EQEKYNYGYT SANNDSSILL PHELEDFKFP AYTPARNLSD 360 SYPDFYSTMF GQGQGGMPLE SASSLTIAQE QKFTIREIAP QWGYASEPTK VLVIGTFTCD 420 LAKREWYCMF GDTEVPVEII QEGVLCCYAP PCLPGKVSLC ITSGNRESCS EIREFEYCDK 480 PSSYIHTNQT DKKFSRSSEE SLLLVRFVQM LLSDQVRHKE GKTRIDLLVS SMASEDSWSQ 540 VIEALLDGSL ASSNTTDWLL EELLKDKLQQ WLSSRLQDES AVPALSKREQ GIIHMVSGLG 600 FGWALTPILN SGVGVNFRDI NGWTALHWAA RFGREKMVAE LLASGASAGA VTDPSQLDPT 660 GKTPASIAAT CGHKGLAGYL SEVSLTSHPT LKLQQSELSR NSADLEAERT VDSISKLNLV 720 SDEDPSLRDT LAAVRNTAQA AARIQSAFRA HSFRKRQQKE STRYATGDEY GILPSDIEGL 780 SAASKLTFRN GNDHNAALSI QKKYRGWKGR KDFLALRQKV VKIQAHVRGH QVRKNYKVFC 840 WAVGVVEKVV LRWRRKGVGL RGFKQELGTL DDGEDEDIVK VFRKQNVDVS IDEAVSRVLS 900 MVDSQQARQQ YRRMLQKYRQ AKAEHERLES EAASTSENEE LNKFIM

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence

MMTSGYNIMD LIREAHIRWL KPGEVLFILQ HFEESQLTHE PPQKPPSGSL FLFNKRVLRF  60
FRKDGHSWRR KKDGRNVGEA HERLKVGNVE ALNCYYAHGE VNPNFQRRSY WMLDPSMDHI  120
VLVHYRDITM GGHSAGPIST VSTGSSTLIQ SSNSYVTQFT QSAAAFSQFR EPYESTSSPG  180
SVEVSSDVVI KSNGTSPLTL AEVTEEIGGS PNFEIDQALQ RIREQLSLDE DNLKDIGAFY  240
SENEISNESG ITVNEQDYGG SGGMHDGSIN YTSEQYPGEY GTAHQYQQQS EVGDGSQKNF  300
VYPSDRNGVL LPQPRRDPVE EQEKYNYGYT SANNDSSILL PHELEDFKFP AYTPARNLSD  360
SYPDFYSTMF GQGQGGMPLE SASSLTIAQE QKFTIREIAP QWGYASEPTK VLVIGTFTCD  420
LAKREWYCMF GDTEVPVEII QEGVLCCYAP PCLPGKVSLC ITSGNRESCS EIREFEYCDK  480
PSSYIHTNQT DKKFSRSSEE SLLLVRFVQM LLSDQVRHKE GKTRIDLLVS SMASEDSWSQ  540
VIEALLDGSL ASSNTTDWLL EELLKDKLQQ WLSSRLQDES AVPALSKREQ GIIHMVSGLG  600
FGWALTPILN SGVGVNFRDI NGWTALHWAA RFGREKMVAE LLASGASAGA VTDPSQLDPT  660
GKTPASIAAT CGHKGLAGYL SEVSLTSHPT LKLQQSELSR NSADLEAERT VDSISKLNLV  720
SDEDPSLRDT LAAVRNTAQA AARIQSAFRA HSFRKRQQKE STRYATGDEY GILPSDIEGL  780
SAASKLTFRN GNDHNAALSI QKKYRGWKGR KDFLALRQKV VKIQAHVRGH QVRKNYKVFC  840
WAVGVVEKVV LRWRRKGVGL RGFKQELGTL DDGEDEDIVK VFRKQNVDVS IDEAVSRVLS  900
MVDSQQARQQ YRRMLQKYRQ AKAEHERLES EAASTSENEE LNKFIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein