PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990838.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 802aa MW: 89468.6 Da PI: 6.4072

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.9	6.8e-52	14	127	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e + rwlk+ e++ iL++fe+ +lt+e++++p+sgsl+L+n++++r+frkDG+sw++kkdg+ v E+he+LKvg+ve+l+cyYah+e np+fqrr XP_024990838.1 14 EaHIRWLKPGEVLFILQHFEESQLTHEPPQKPPSGSLFLFNKRVLRFFRKDGHSWRRKKDGRNVGEAHERLKVGNVEALNCYYAHGEVNPNFQRR 108 4488***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhyle 116 +yw+L+ ++++ivlvhy++ XP_024990838.1 109 SYWMLDPSMDHIVLVHYRD 127 ***************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence
MMTSGYNIMD LIREAHIRWL KPGEVLFILQ HFEESQLTHE PPQKPPSGSL FLFNKRVLRF 60 FRKDGHSWRR KKDGRNVGEA HERLKVGNVE ALNCYYAHGE VNPNFQRRSY WMLDPSMDHI 120 VLVHYRDITM GGHSAGPIST VSTGSSTLIQ SSNSYVTQFT QSAAAFSQFR EPYESTSSPG 180 SVEVSSDVVI KSNGTSPLTL AEVTEEIGGS PNFEIDQALQ RIREQLSLDE DNLKDIGAFY 240 SENEISNESG ITVNEQDYGG SGGMHDGSIN YTSEQYPGEY GTAHQYQQQS EGEFSITSQQ 300 TSIWDDVLIY NGNAVGDGSQ KNFVYPSDRN GVLLPQPRRD PVEEQEKYNY GYTSANNDSS 360 ILLPHELEDF KFPAYTPARN LSDSYPDFYS TMFGQGQGGM PLESASSLTI AQEQKFTIRE 420 IAPQWGYASE PTKDESAVPA LSKREQGIIH MVSGLGFGWA LTPILNSGVG VNFRDINGWT 480 ALHWAARFGR EKMVAELLAS GASAGAVTDP SQLDPTGKTP ASIAATCGHK GLAGYLSEVS 540 LTSHPTLKLQ QSELSRNSAD LEAERTVDSI SKLNLVSDED PSLRDTLAAV RNTAQAAARI 600 QSAFRAHSFR KRQQKESTRY ATGDEYGILP SDIEGLSAAS KLTFRNGNDH NAALSIQKKY 660 RGWKGRKDFL ALRQKVVKIQ AHVRGHQVRK NYKVFCWAVG VVEKVVLRWR RKGVGLRGFK 720 QELGTLDDGE DEDIVKVFRK QNVDVSIDEA VSRVLSMVDS QQARQQYRRM LQKYRQAKAE 780 HERLESEAAS TSENEELNKF IM

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence

MMTSGYNIMD LIREAHIRWL KPGEVLFILQ HFEESQLTHE PPQKPPSGSL FLFNKRVLRF  60
FRKDGHSWRR KKDGRNVGEA HERLKVGNVE ALNCYYAHGE VNPNFQRRSY WMLDPSMDHI  120
VLVHYRDITM GGHSAGPIST VSTGSSTLIQ SSNSYVTQFT QSAAAFSQFR EPYESTSSPG  180
SVEVSSDVVI KSNGTSPLTL AEVTEEIGGS PNFEIDQALQ RIREQLSLDE DNLKDIGAFY  240
SENEISNESG ITVNEQDYGG SGGMHDGSIN YTSEQYPGEY GTAHQYQQQS EGEFSITSQQ  300
TSIWDDVLIY NGNAVGDGSQ KNFVYPSDRN GVLLPQPRRD PVEEQEKYNY GYTSANNDSS  360
ILLPHELEDF KFPAYTPARN LSDSYPDFYS TMFGQGQGGM PLESASSLTI AQEQKFTIRE  420
IAPQWGYASE PTKDESAVPA LSKREQGIIH MVSGLGFGWA LTPILNSGVG VNFRDINGWT  480
ALHWAARFGR EKMVAELLAS GASAGAVTDP SQLDPTGKTP ASIAATCGHK GLAGYLSEVS  540
LTSHPTLKLQ QSELSRNSAD LEAERTVDSI SKLNLVSDED PSLRDTLAAV RNTAQAAARI  600
QSAFRAHSFR KRQQKESTRY ATGDEYGILP SDIEGLSAAS KLTFRNGNDH NAALSIQKKY  660
RGWKGRKDFL ALRQKVVKIQ AHVRGHQVRK NYKVFCWAVG VVEKVVLRWR RKGVGLRGFK  720
QELGTLDDGE DEDIVKVFRK QNVDVSIDEA VSRVLSMVDS QQARQQYRRM LQKYRQAKAE  780
HERLESEAAS TSENEELNKF IM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-122	CAMTA family protein