PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990839.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27503.1 Da    PI: 8.6903
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.91e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_024990839.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box98.21.2e-32841759100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + +   s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL++slk+iRs +++++l+ + +lqk+e++l+e+n++L+++l+e
  XP_024990839.1  84 SAREALLSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSCKELESLERQLDTSLKQIRSARTQFMLDTLTDLQKREHALNEANRTLKQRLME 175
                     455667789*******************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSSMLKTLER YQKCNYGAPE TNVSAREALL SSQQEYLKLK ARYEALQRSQ RNLLGEDLGP  120
LSCKELESLE RQLDTSLKQI RSARTQFMLD TLTDLQKREH ALNEANRTLK QRLMEGSQVH  180
WHPQEMGYDR QHEAQHQSDE AFFHPLDCGP TLQIGYQTDP LAAAAAAGPS SNNYMQGWFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-118MIKC_MADS family protein