PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990846.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28335.2 Da    PI: 9.0803
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.74e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+e+s+
  XP_024990846.1 10 RIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSNKGKLFEFST 59
                    8***********************************************96 PP
2K-box106.72.7e-35821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++a   s++ e++kLk++ e Lqr++Rh++Ged+esLslke+q+LeqqL+++lk+iRs+Kn+ll+e+i+elqkk k++qe+n++L+kk++e
  XP_024990846.1  82 AADAAPRSWTLEYNKLKSRAELLQRNHRHYMGEDIESLSLKEIQNLEQQLDTGLKNIRSRKNQLLHESISELQKKGKAIQEQNTTLTKKIKE 173
                     46777899*********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MGRGKVQLRR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSN KGKLFEFSTD  60
SCMESILERY ERYSYTERQL VAADAAPRSW TLEYNKLKSR AELLQRNHRH YMGEDIESLS  120
LKEIQNLEQQ LDTGLKNIRS RKNQLLHESI SELQKKGKAI QEQNTTLTKK IKEKEKEKTI  180
TQNVPWEQHN YVDTDATFLM PPPPPALNIG ENYNQGGGGG EAAEGRTNDL DLSLQPIYSC  240
HLRCFPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.15e-97MIKC_MADS family protein