PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990847.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 171aa MW: 19829.5 Da PI: 9.5491

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.3	6.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf kRrng+lKKA+ELSvLCdaeva+iifs+ gklye++s XP_024990847.1 9 KRIENKINRQVTFGKRRNGLLKKAYELSVLCDAEVALIIFSNGGKLYEFCS 59 79***********************************************96 PP
2	K-box	88.7	1.1e-29	81	171	8	98
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++++a+s++qe+ kLk++++ q++qRh+lGe+Le+L keL qLe+qL++sl+++Rs+Kn+++l+q+++lq+ke++l e nk+Lr+k+ XP_024990847.1 81 NHQDQDAQSSYQEYLKLKAKVDIQQQSQRHYLGEELERLGSKELDQLERQLDSSLRQVRSTKNQHMLDQLSDLQQKEQSLLEVNKSLRSKV 171 368999**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MGRGRVELKR IENKINRQVT FGKRRNGLLK KAYELSVLCD AEVALIIFSN GGKLYEFCSG 60 PSMSKTLERY QRCSYGAMEA NHQDQDAQSS YQEYLKLKAK VDIQQQSQRH YLGEELERLG 120 SKELDQLERQ LDSSLRQVRS TKNQHMLDQL SDLQQKEQSL LEVNKSLRSK V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-83	MIKC_MADS family protein