PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990886.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 1436aa MW: 158365 Da PI: 6.0145

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2e-07	1410	1434	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+ f+++G Ck G+ C++ H++ XP_024990886.1 1410 GQRICK-FYESGRCKKGSACNYLHPQ 1434 6899.8899***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1436 aa Download sequence
MMEVPNSGVE SQTLDRSQQI DGDVSKLVVA DGGVKVEVGN AGGGAQVVKR KRGRPPKVQA 60 NPLSGKKSKE EDEDEDVCFI CFDGGSLVLC DRRGCPKAYH PACIKRDEAF FKSKAKWNCG 120 WHICSICEKT AHNMCFTCTY SLCKGCAKKA DFVCVRDDKG FCTVCMKTIM LIENSGRGKD 180 ETARVDFDDK SSWEYLFKVY WVYLKGKLSL TFNEITQANN PWERSSAIAS IEPTGSHISA 240 SGRRSITSDA SFGNLEANES KRRKTYEQTN GLPKESRSMV ESKEWASKEL LDFVAHMKNG 300 DTSVLSQFDV QALLLEYIKR NNLRDPRKNT QIICDLRLKN LFGKSRVGNI EMLKLLESHF 360 AIKEDSQKNT IIGTAKQSVA DCSTDNTLVV GNKERRNHWK GEQRTTQIKL DEYAAIDVHN 420 MNLIYLRRNL MESLIEDSEK FHEKVVGSIV QIRISGSDQK DDMYRLVQVV GTTKVDVPYK 480 IGDKSVDVML EVLNLDKKET VSIDTISNQE LSEDECRRLR ESIRCGLVRY FTVGEIQEKA 540 TALQSLLLDD RMETEMLRLN HLRDRASGRG QKKGLRECVQ KLQLLKTPEE RERRLQEIPE 600 VHSDPKMNPD YESDDTEEYF NNEHGEHVKP KYPWVSGMNT IPPQKEAESS NDQPKEMDIT 660 AHPNVEEDSS KAMERSNTSN TGKDVFGSSN SERPQNEIDC NGSTISKCNQ EAAVSSSLSN 720 IASEPAPSFL SMMMDNPSVD EDAWHYRDPS GNVQGPFSMV QLQKWSIAGY FPADMRIWAS 780 READSLLLTD AIQAQFHNYD GRWHENVASN NKIGNQTEGA NVCNAVPSST IPATPFALDS 840 VNLEKLPDTR ASSGQSSGQN WNASNYNLNC NPPTTSVASL TKPNESVKPF DARDMPSSTP 900 NVSSVFTITD AALVDLPSPL LKKASHVNEK VQDAGGKEPK LLVQESGNPP SWSTALSLVV 960 GGAQLPETAD EWGRYPPAAV KPEEWDSGRV SGYSSKPIEV PGHQVATTNS TIDQIMHSSP 1020 PPSSQPYNNL PSWHGLGETI EFSTLAEESV SDLLAEVDAM ESRNGVPSPT SRRNSFLEDL 1080 FNGSIDDFSP TADQGTRSDG FSSTADLQLH RQSTSTTVEH LAGVSQSNNN VFDMVKRSTG 1140 LHQFSFGLET KPTGAVTIPQ TTNSENMAFK WAEMGGSELQ PSRLDMIDLN DSTRAEADEG 1200 TNDYQVEEKV KNHSGFMGHG IGRAGGNTVQ QPESRGGRKM KAGVSGEDIK TGTKLSGGFP 1260 DKEEEEGEFI QPEAPPPPPP PPLLPPPPPP PLPPPPLTMG LDVVDSRRVG SETSNPKISG 1320 RASQGTTNTG RHSNASRSGN AGRERESQHH RRSGGDRYNS NSPRERSHHV EDTGGGYSRS 1380 SRTPWSRQSS SSSSSYSRPP PPAAAAASKG QRICKFYESG RCKKGSACNY LHPQDR

Sequence ? help Back to Top

Protein Sequence Length: 1436 aa Download sequence

MMEVPNSGVE SQTLDRSQQI DGDVSKLVVA DGGVKVEVGN AGGGAQVVKR KRGRPPKVQA  60
NPLSGKKSKE EDEDEDVCFI CFDGGSLVLC DRRGCPKAYH PACIKRDEAF FKSKAKWNCG  120
WHICSICEKT AHNMCFTCTY SLCKGCAKKA DFVCVRDDKG FCTVCMKTIM LIENSGRGKD  180
ETARVDFDDK SSWEYLFKVY WVYLKGKLSL TFNEITQANN PWERSSAIAS IEPTGSHISA  240
SGRRSITSDA SFGNLEANES KRRKTYEQTN GLPKESRSMV ESKEWASKEL LDFVAHMKNG  300
DTSVLSQFDV QALLLEYIKR NNLRDPRKNT QIICDLRLKN LFGKSRVGNI EMLKLLESHF  360
AIKEDSQKNT IIGTAKQSVA DCSTDNTLVV GNKERRNHWK GEQRTTQIKL DEYAAIDVHN  420
MNLIYLRRNL MESLIEDSEK FHEKVVGSIV QIRISGSDQK DDMYRLVQVV GTTKVDVPYK  480
IGDKSVDVML EVLNLDKKET VSIDTISNQE LSEDECRRLR ESIRCGLVRY FTVGEIQEKA  540
TALQSLLLDD RMETEMLRLN HLRDRASGRG QKKGLRECVQ KLQLLKTPEE RERRLQEIPE  600
VHSDPKMNPD YESDDTEEYF NNEHGEHVKP KYPWVSGMNT IPPQKEAESS NDQPKEMDIT  660
AHPNVEEDSS KAMERSNTSN TGKDVFGSSN SERPQNEIDC NGSTISKCNQ EAAVSSSLSN  720
IASEPAPSFL SMMMDNPSVD EDAWHYRDPS GNVQGPFSMV QLQKWSIAGY FPADMRIWAS  780
READSLLLTD AIQAQFHNYD GRWHENVASN NKIGNQTEGA NVCNAVPSST IPATPFALDS  840
VNLEKLPDTR ASSGQSSGQN WNASNYNLNC NPPTTSVASL TKPNESVKPF DARDMPSSTP  900
NVSSVFTITD AALVDLPSPL LKKASHVNEK VQDAGGKEPK LLVQESGNPP SWSTALSLVV  960
GGAQLPETAD EWGRYPPAAV KPEEWDSGRV SGYSSKPIEV PGHQVATTNS TIDQIMHSSP  1020
PPSSQPYNNL PSWHGLGETI EFSTLAEESV SDLLAEVDAM ESRNGVPSPT SRRNSFLEDL  1080
FNGSIDDFSP TADQGTRSDG FSSTADLQLH RQSTSTTVEH LAGVSQSNNN VFDMVKRSTG  1140
LHQFSFGLET KPTGAVTIPQ TTNSENMAFK WAEMGGSELQ PSRLDMIDLN DSTRAEADEG  1200
TNDYQVEEKV KNHSGFMGHG IGRAGGNTVQ QPESRGGRKM KAGVSGEDIK TGTKLSGGFP  1260
DKEEEEGEFI QPEAPPPPPP PPLLPPPPPP PLPPPPLTMG LDVVDSRRVG SETSNPKISG  1320
RASQGTTNTG RHSNASRSGN AGRERESQHH RRSGGDRYNS NSPRERSHHV EDTGGGYSRS  1380
SRTPWSRQSS SSSSSYSRPP PPAAAAASKG QRICKFYESG RCKKGSACNY LHPQDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein