PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990910.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 238aa    MW: 26841.6 Da    PI: 5.4854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-1284128754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      rE+ RRdr+N++f eL ++l +    +++K +K +iL  A++ I +L
  XP_024990910.1  84 GREKLRRDRMNERFLELGSILEPG---RAPKTDKTAILSDAIRMITQL 128
                     59*********************9...9******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MEIDENPNWL FDYGLMEDIS AAHFTVPPPP LPPPIVFDWP SPASLPAVSI EIESSFIDFE  60
SPKEAGPRKR LKSEPNNVFG SKAGREKLRR DRMNERFLEL GSILEPGRAP KTDKTAILSD  120
AIRMITQLRS ESERLNESNV DLQEKIKELK AEKNELRDEK QRLKVEKEKL EQQVKSMNGQ  180
PSYLAHATAM RAAFAAQEQA AGNKLMPFVG YPSVAMWQFM PSSVVDTSQD HVLRPPVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773PRKRLKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-63bHLH family protein