PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991006.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 847aa    MW: 94420.8 Da    PI: 6.1072
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_024991006.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_024991006.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp117.61e-38253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+ eFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  XP_024991006.1 253 AAHAAATNSCFTIFYNPRASPCEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    
MKLSTSGLGQ QPHEGEKKCL NSELWHACAG PLVSLPIVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTAQEQKDT FLPVELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTIFYNPR ASPCEFVIPL SKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWYPG ASSFQDSRDD AVNGMAWLRG DTGEQGLHSL NFQSVGMFPW  420
MQQRVDPSFL QSNLNQQYQA ALAAGLQNLG SGDALKQQLM QFQQQQQPIQ YPQHSGASNP  480
LFQQSHQPIQ QLIPQQFVHG QTQMLDNLPR SQQQQVNNQP EEQQQQQLPP NSYPETYLVQ  540
HEQLQTRPQS THSFQKTEFM DPNVKFTSNI TTSAMQNMLG SLSPEGNSNL LSFSRTGQPA  600
LAEHQSNQQS WVSRFAQSQA NLSSGSPSVL PYPEKNGGAE QETSSLDAQN HSLFGGTNID  660
SSGLLLPATV SNIGASSTET DLTTMPSGAS GLQNSPYFGY MQDSSELLHT TGQIDPPNPN  720
RTFVKVYKSG SVGRSLDITR FNSYPELREE LGQMFNIEGL LEDPQRSGWQ LVFVDRENDV  780
LLLGDGPWEA FVNSVWYIKI LSPEDVQKLG KQELESLSQN TGERMSSLAN DGRDLSGLPP  840
SMGSLDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein