PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991007.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 823aa    MW: 92067.3 Da    PI: 5.9977
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23103204199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_024991007.1 103 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 193
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_024991007.1 194 KNQLLLGIRRA 204
                     9999****997 PP
2Auxin_resp117.61e-38229312183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+ eFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  XP_024991007.1 229 AAHAAATNSCFTIFYNPRASPCEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 312
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    
MPVLVLLCPY RLWAVEWFTS LRAIVSSQVA ATTNKEVDAH IPNYPSLPPQ LICQLHNVTM  60
HADVETDEVY AQMTLQPLTA QEQKDTFLPV ELGTPSRQPT NYFCKTLTAS DTSTHGGFSV  120
PRRAAEKVFP PLDFSQQPPA QELIARDLHD VEWKFRHIFR GQPKRHLLTT GWSVFVSAKR  180
LVAGDSVLFI WNEKNQLLLG IRRATRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSCFT  240
IFYNPRASPC EFVIPLSKYV KAVYHTRVSV GMRFRMLFET EESSVRRYMG TITGIGDLDP  300
VRWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPSLFPLRLK RPWYPGASSF  360
QDSRDDAVNG MAWLRGDTGE QGLHSLNFQS VGMFPWMQQR VDPSFLQSNL NQQYQAALAA  420
GLQNLGSGDA LKQQLMQFQQ QQQPIQYPQH SGASNPLFQQ SHQPIQQLIP QQFVHGQTQM  480
LDNLPRSQQQ QVNNQPEEQQ QQQLPPNSYP ETYLVQHEQL QTRPQSTHSF QKTEFMDPNV  540
KFTSNITTSA MQNMLGSLSP EGNSNLLSFS RTGQPALAEH QSNQQSWVSR FAQSQANLSS  600
GSPSVLPYPE KNGGAEQETS SLDAQNHSLF GGTNIDSSGL LLPATVSNIG ASSTETDLTT  660
MPSGASGLQN SPYFGYMQDS SELLHTTGQI DPPNPNRTFV KVYKSGSVGR SLDITRFNSY  720
PELREELGQM FNIEGLLEDP QRSGWQLVFV DRENDVLLLG DGPWEAFVNS VWYIKILSPE  780
DVQKLGKQEL ESLSQNTGER MSSLANDGRD LSGLPPSMGS LDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein