PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991009.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 710aa MW: 78905.4 Da PI: 6.4141

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.4	1.6e-10	48	91	54	99
EETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 54 kksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ XP_024991009.1 48 GQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 91 56889***********************..8899999**997 PP
2	Auxin_resp	117.9	8.2e-39	116	199	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+ eFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k XP_024991009.1 116 AAHAAATNSCFTIFYNPRASPCEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 199 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MGDSLFLAAQ QKKCSLHWIS LSSHLPRNLL RGISMTLNGS SGISLGVGQP KRHLLTTGWS 60 VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ATRPQTVMPS SVLSSDSMHI GLLAAAAHAA 120 ATNSCFTIFY NPRASPCEFV IPLSKYVKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT 180 GIGDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS LFPLRLKRPW 240 YPGASSFQDS RDDAVNGMAW LRGDTGEQGL HSLNFQSVGM FPWMQQRVDP SFLQSNLNQQ 300 YQAALAAGLQ NLGSGDALKQ QLMQFQQQQQ PIQYPQHSGA SNPLFQQSHQ PIQQLIPQQF 360 VHGQTQMLDN LPRSQQQQVN NQPEEQQQQQ LPPNSYPETY LVQHEQLQTR PQSTHSFQKT 420 EFMDPNVKFT SNITTSAMQN MLGSLSPEGN SNLLSFSRTG QPALAEHQSN QQSWVSRFAQ 480 SQANLSSGSP SVLPYPEKNG GAEQETSSLD AQNHSLFGGT NIDSSGLLLP ATVSNIGASS 540 TETDLTTMPS GASGLQNSPY FGYMQDSSEL LHTTGQIDPP NPNRTFVKVY KSGSVGRSLD 600 ITRFNSYPEL REELGQMFNI EGLLEDPQRS GWQLVFVDRE NDVLLLGDGP WEAFVNSVWY 660 IKILSPEDVQ KLGKQELESL SQNTGERMSS LANDGRDLSG LPPSMGSLDF

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MGDSLFLAAQ QKKCSLHWIS LSSHLPRNLL RGISMTLNGS SGISLGVGQP KRHLLTTGWS  60
VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ATRPQTVMPS SVLSSDSMHI GLLAAAAHAA  120
ATNSCFTIFY NPRASPCEFV IPLSKYVKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT  180
GIGDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS LFPLRLKRPW  240
YPGASSFQDS RDDAVNGMAW LRGDTGEQGL HSLNFQSVGM FPWMQQRVDP SFLQSNLNQQ  300
YQAALAAGLQ NLGSGDALKQ QLMQFQQQQQ PIQYPQHSGA SNPLFQQSHQ PIQQLIPQQF  360
VHGQTQMLDN LPRSQQQQVN NQPEEQQQQQ LPPNSYPETY LVQHEQLQTR PQSTHSFQKT  420
EFMDPNVKFT SNITTSAMQN MLGSLSPEGN SNLLSFSRTG QPALAEHQSN QQSWVSRFAQ  480
SQANLSSGSP SVLPYPEKNG GAEQETSSLD AQNHSLFGGT NIDSSGLLLP ATVSNIGASS  540
TETDLTTMPS GASGLQNSPY FGYMQDSSEL LHTTGQIDPP NPNRTFVKVY KSGSVGRSLD  600
ITRFNSYPEL REELGQMFNI EGLLEDPQRS GWQLVFVDRE NDVLLLGDGP WEAFVNSVWY  660
IKILSPEDVQ KLGKQELESL SQNTGERMSS LANDGRDLSG LPPSMGSLDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein