PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991027.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family BBR-BPC
Protein Properties Length: 309aa    MW: 35014.4 Da    PI: 9.8728
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind326.48e-10013091301
       GAGA_bind   1 mdddgsre..rnkg.yye..............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 
                     mdd  +re  r++  yy+              +  + +  ++ ++  +++erd++i+er+ alsekk a+ erd+a +qrd+a+a+rn+a+ erd
  XP_024991027.1   1 MDDGVHREngRHRIdYYKgvhpqwnmmpqyqmK-DQAAMMMNRKIAHILTERDTAIEERDRALSEKKTALEERDIAIQQRDTAIADRNDAIRERD 94 
                     788888777888888999999999999655431.333344889999999********************************************** PP

       GAGA_bind  79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrq..rakkpkekkakkkkkks 171
                     n+++al ++e++++++         g+k ++++++ ++++ ++++++ r+ + +ea+pi+  + e  +k+k+ k++  r+    ++ akk+kk +
  XP_024991027.1  95 NAIAALRFQETTMNTQF-----QRGGSKRAHHSNN-HQHHPAQPSYG-RDPHVTEAFPITAVPGEPVNKSKMIKENkpRGGGGSSRSAKKQKKVG 182
                     ********999865433.....2334555555554.33334455666.89999******998887655554443330144455666677888888 PP

       GAGA_bind 172 ekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
                     e+ +++v++++    skae++ ++l  ++++++Dest+P+P+CsCtG+ rqCYkWG+GGWqS+CCttt+SvyPLP+++++r++R++grKmS+ +f
  XP_024991027.1 183 EDLNRNVTTDG----SKAEWDAQELgLMDQINFDESTMPIPICSCTGVARQCYKWGSGGWQSSCCTTTLSVYPLPQMPNKRHSRMGGRKMSGTVF 273
                     88888888777....89********4469****************************************************************** PP

       GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++lL++Laa+G+dls pvDLk++WAkHGtn+++ti+
  XP_024991027.1 274 TRLLSRLAAQGHDLSDPVDLKNYWAKHGTNRYITIK 309
                     ***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MDDGVHRENG RHRIDYYKGV HPQWNMMPQY QMKDQAAMMM NRKIAHILTE RDTAIEERDR  60
ALSEKKTALE ERDIAIQQRD TAIADRNDAI RERDNAIAAL RFQETTMNTQ FQRGGSKRAH  120
HSNNHQHHPA QPSYGRDPHV TEAFPITAVP GEPVNKSKMI KENKPRGGGG SSRSAKKQKK  180
VGEDLNRNVT TDGSKAEWDA QELGLMDQIN FDESTMPIPI CSCTGVARQC YKWGSGGWQS  240
SCCTTTLSVY PLPQMPNKRH SRMGGRKMSG TVFTRLLSRL AAQGHDLSDP VDLKNYWAKH  300
GTNRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-118BBR-BPC family protein