PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991083.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 471aa MW: 53457.3 Da PI: 6.7813

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5.3e-14	28	72	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + + +G+++W+ Ia+++ +t qc+ rw++yl XP_024991083.1 28 SWSQEEDDILREQISIHGTDNWTIIASKFK-DKTTRQCRRRWFTYL 72 6**************************9.***********97 PP
2	Myb_DNA-binding	42.9	1.1e-13	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a + +G++ W+ Ia+ + gRt++ +k+r+ + XP_024991083.1 78 KGGWSPEEDMLLCEAQRIFGNR-WTEIAKVVS-GRTDNAVKNRFST 121 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MQNTKKKACD GNNGVGEALK QKERHIVSWS QEEDDILREQ ISIHGTDNWT IIASKFKDKT 60 TRQCRRRWFT YLNSDFKKGG WSPEEDMLLC EAQRIFGNRW TEIAKVVSGR TDNAVKNRFS 120 TLCKKRAKHE ALAKENNISY INANNKRTMF HDGQKIETSM PPLKIRRKHI AGAMEDCSPE 180 EGLIRNCRTR GQQLRPPFAV LNCHNIDDSK IQLHSSNKEI PKDASYNMGE GTFLKKDDPK 240 IIVLMQQAEL LTSLALKVHT EKTDQSFENA WKVVQNFLKH TKESDELGFN ISDMGFRLEN 300 FKDLVEDIRS CNDGSQQYWR QPDLYQGSPS SSEYSTGSTI LSQINERLEP HHDGLCEVEH 360 QPHEVMQPSD IVGDANLVTS DTVISPDVLP SCDVFDNDVE AGCPLPNSEF NSPLQVTPLF 420 RSMAAGIPSP QFSESERHFL LKTLGMELTP PNPSTRTSQP PPCKRALLHC L

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MQNTKKKACD GNNGVGEALK QKERHIVSWS QEEDDILREQ ISIHGTDNWT IIASKFKDKT  60
TRQCRRRWFT YLNSDFKKGG WSPEEDMLLC EAQRIFGNRW TEIAKVVSGR TDNAVKNRFS  120
TLCKKRAKHE ALAKENNISY INANNKRTMF HDGQKIETSM PPLKIRRKHI AGAMEDCSPE  180
EGLIRNCRTR GQQLRPPFAV LNCHNIDDSK IQLHSSNKEI PKDASYNMGE GTFLKKDDPK  240
IIVLMQQAEL LTSLALKVHT EKTDQSFENA WKVVQNFLKH TKESDELGFN ISDMGFRLEN  300
FKDLVEDIRS CNDGSQQYWR QPDLYQGSPS SSEYSTGSTI LSQINERLEP HHDGLCEVEH  360
QPHEVMQPSD IVGDANLVTS DTVISPDVLP SCDVFDNDVE AGCPLPNSEF NSPLQVTPLF  420
RSMAAGIPSP QFSESERHFL LKTLGMELTP PNPSTRTSQP PPCKRALLHC L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	1e-158	MYB family protein