PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991164.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 244aa MW: 26921.2 Da PI: 6.7844

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	1e-19	17	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed lv++v+q+G+++W++I+++++ gR++k+c++rw + XP_024991164.1 17 KGSWSPQEDATLVKLVEQHGPRNWSLISSRIP-GRSGKSCRLRWCNQ 62 799***************************.*********985 PP
2	Myb_DNA-binding	54.3	3.2e-17	71	113	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEd+ +++a++ +G++ W+tI+r ++ gRt++ +k++w++ XP_024991164.1 71 PFTREEDDVILRAHAIHGNK-WSTISRLLP-GRTDNAIKNHWNST 113 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MEAIEGGGGG VAGGKIKGSW SPQEDATLVK LVEQHGPRNW SLISSRIPGR SGKSCRLRWC 60 NQLSPDVEHR PFTREEDDVI LRAHAIHGNK WSTISRLLPG RTDNAIKNHW NSTLRRRGLP 120 PGEVSLGSNS NSGVIKRPLA DPLSDSTQSD PPLKRQCSRT STDQSSCDGP ATVLTLLPPG 180 EMKAVEHVTE KNEEVDDDVD DKSTAEIEDT CLVTIMKRMI AEEVRIYINE IRDNKGPRIG 240 QIFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-53	MYB family protein