PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991175.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 439aa    MW: 47831.9 Da    PI: 7.6962
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.6e-09116137426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+f+ + G C+yGd+C++ H+
  XP_024991175.1 116 KICNFWVQ-GNCSYGDKCRYLHS 137
                     79******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    
MDFDGGKRVF NRLGPPQQQS DNRNQKVCYH WRAGNCNRFP CPFLHRELSA PANGTASSKR  60
PYGFATDDQR STTARRGGGS NFNGPSSWGR GGGRGGNAIN NNNNSNRGIV VKKTEKICNF  120
WVQGNCSYGD KCRYLHSWCT GSCFAMLTQL EGHQKVVSGI ALPAGSDKLY TGSKDETVRV  180
WDCQSGQCAG VINLGGEVGC MLSEGPWMFV GLPNLVKAWN VQTSADLSLN GPVGQVYSLV  240
VGNDLLFAGT QDGNILAWKF NAVTNCFEPA ASLQGHTSAV VTLVVGANRL YSGSMDKSIR  300
VWNLENLQCL QTMTEHTSVV MSVLCWDQFL LSCSLDKTIK VWAATDSGNL EVTYTHNEEH  360
GLLTLCGMHD LESKPVLLCS CNDNSVRAYD LPSFAERGKI FAKQEIRSIH GGPNIFFTGD  420
GTGEVKVWQW LADQTATPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein