PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991176.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 421aa    MW: 45992.9 Da    PI: 7.839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.1e-09116137426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+f+ + G C+yGd+C++ H+
  XP_024991176.1 116 KICNFWVQ-GNCSYGDKCRYLHS 137
                     79******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    
MDFDGGKRVF NRLGPPQQQS DNRNQKVCYH WRAGNCNRFP CPFLHRELSA PANGTASSKR  60
PYGFATDDQR STTARRGGGS NFNGPSSWGR GGGRGGNAIN NNNNSNRGIV VKKTEKICNF  120
WVQGNCSYGD KCRYLHSWCT GSCFAMLTQL EGHQKVVSGI ALPAGSDKLY TGSKDETVRV  180
WDCQSGQCAG VINLGGEVGC MLSEGPWMFV GLPNLVKVYS LVVGNDLLFA GTQDGNILAW  240
KFNAVTNCFE PAASLQGHTS AVVTLVVGAN RLYSGSMDKS IRVWNLENLQ CLQTMTEHTS  300
VVMSVLCWDQ FLLSCSLDKT IKVWAATDSG NLEVTYTHNE EHGLLTLCGM HDLESKPVLL  360
CSCNDNSVRA YDLPSFAERG KIFAKQEIRS IHGGPNIFFT GDGTGEVKVW QWLADQTATP  420
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein