PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991181.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 274aa    MW: 31816.8 Da    PI: 8.6163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991181.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed llv++++ +G g+W++ a+  g++Rt+k+c++rw++yl
   XP_024991181.1 21 RGPWTLDEDNLLVHYITCHGEGRWNSLAKSSGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP
2Myb_DNA-binding513.4e-1675117246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_024991181.1  75 GNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                      678******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MRPTRKMTTS CNGKELGELR RGPWTLDEDN LLVHYITCHG EGRWNSLAKS SGLKRTGKSC  60
RLRWLNYLKP DVKHGNLTPQ EQLLILELHS KWGNRWSKIA QHLPGRTDNE IKNYWRTKVQ  120
KQARHLKIDP SSNRFVEVLR QFWLPRLLEK VEHSSPSSLS TSTSTMEADQ KNLIPQPQGK  180
ETPTENMNSS SSNCSSDSTG IMLPYLSENS LKNNNYFVEN SNFEVMSFNQ SNTQDLRSTD  240
MSILDFQLTD VDWMNNDLVG DTFWSMDELW QFRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-80MYB family protein