PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991224.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 293aa    MW: 31984.8 Da    PI: 9.0906
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v+++G+g W+tI +          R+  ++k++w+++
   XP_024991224.1  5 KQKWTLEEEAALKAGVAKYGPGKWSTILKDSEfvsvlHLRSNVDLKDKWRNL 56
                     79***********************************88***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MGVPKQKWTL EEEAALKAGV AKYGPGKWST ILKDSEFVSV LHLRSNVDLK DKWRNLNLMA  60
SGYGSRQRAR PGKSKTQSIH KLENISTASK EDHDMKVCIP DPSTTLAARL QIGSSNMSMP  120
RLDSLILDTI ANLKESHGSS RAAIAEYIEE KHSAPPNLEK LLKAELKALI GCGKLIKVKH  180
RYRIAPSSSY LGLKENPSLL LLEVKQEYCS MEETGATKIL TKADIDAELE KMRSMTPQQA  240
AAVAVKAVAE AEAAISEAER AEREAQAAEA DAELARVFAA AAMQSLKRTA LCT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.16e-56MYB_related family protein