PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991235.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23757.3 Da    PI: 8.1183
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr g+lKKA ELSvLCdaeva++ifs++g+lye+ss
  XP_024991235.1  9 KRIENATSRQVTFSKRRIGLLKKACELSVLCDAEVALLIFSQKGELYEFSS 59
                    79***********************************************96 PP
2K-box67.35.1e-2381169997
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       e ++++l+++++ ++k+ie+L+ +qR+l+G++L s+s+ eL +L ++Le+sl+ iR++Kn l+++qie+l+ ke+ l een++L ++
  XP_024991235.1  81 EIEPQNQQLKHDATIIQKKIEQLEVSQRKLMGQNLASCSVDELLKLDSKLEHSLTIIRARKNLLFKDQIENLKAKERFLLEENTRLCQQ 169
                     45667899*****************************************************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MVRGKVEMKR IENATSRQVT FSKRRIGLLK KACELSVLCD AEVALLIFSQ KGELYEFSSS  60
NIKKTIQKYR DNAKANESCN EIEPQNQQLK HDATIIQKKI EQLEVSQRKL MGQNLASCSV  120
DELLKLDSKL EHSLTIIRAR KNLLFKDQIE NLKAKERFLL EENTRLCQQN TSLCEKEIHV  180
TATSRESIQN LEVETELFIG SRLDEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.37e-70MIKC_MADS family protein