PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991271.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 175aa MW: 19283.5 Da PI: 9.8605

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131	4.3e-41	71	147	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+e+C++dl+eak+yhrrh+vCe+h+ka +v+v+g++qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk++ XP_024991271.1 71 CCQAEKCTSDLAEAKQYHRRHRVCEFHAKAHAVVVAGIHQRFCQQCSRFHELPEFDDTKRSCRRRLAGHNERRRKNS 147 6**************************************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
METKIYKVSS KEKWSMMKKE LVNDGYGNDL VGGSGGEDGG SVGGGGGSSN GDVKKKKGGH 60 NGGGSTSATK CCQAEKCTSD LAEAKQYHRR HRVCEFHAKA HAVVVAGIHQ RFCQQCSRFH 120 ELPEFDDTKR SCRRRLAGHN ERRRKNSIEF KGTTDKGRFQ MTIQDNAATT TYNHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	5e-41	SBP family protein