PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991285.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 502aa MW: 55382.6 Da PI: 6.2395

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.7	2.6e-17	178	227	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_024991285.1 178 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 227 78*****************......55**********************997 PP
2	AP2	40.1	9.1e-13	270	320	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+ + eAa+a+++a+ k +g XP_024991285.1 270 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDNEVEAARAYDKAAIKCNG 320 89******.7**...5...334336******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MLDLNTDVAV SFDDSGNNCD RVDFESKENV LEDRQSEIHS GTSVSSDVLN ADDDLPLANA 60 ADADDEDAVS YTAYRNIEKR SYHFGIVDRP GYAKEISNGT SGGLTTRQFF PVVELELEDE 120 ELGSRSITSS PLATSMLGSH WLNLMVPEPA QAPQHLQVPS PAPQQAKKSR RGPRSRSSQY 180 RGVTFYRRTG RWESHIWDCG KQVYLGGFDT ALAAARAYDR AAIKFRGIDA DINFHINEYE 240 EDMTQVKNLS KEEFIHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL 300 FDNEVEAARA YDKAAIKCNG REAVTNFDPS IYGTDISLEA RDEASGHNLD LNLWVSPTTD 360 SQKGNDNVQK MDMCFTACEL PSEKRLKVQT RVPACMGGHT GVSKHYPIWP TSSMYSGFIP 420 NYEGIAMGKE GASVVPLNSA WQVQMLRGHG VSLQLPVSVS STAASSGFSS SSNNKAFHHD 480 ASILMPTPGG ISSPHYFTNQ NG

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MLDLNTDVAV SFDDSGNNCD RVDFESKENV LEDRQSEIHS GTSVSSDVLN ADDDLPLANA  60
ADADDEDAVS YTAYRNIEKR SYHFGIVDRP GYAKEISNGT SGGLTTRQFF PVVELELEDE  120
ELGSRSITSS PLATSMLGSH WLNLMVPEPA QAPQHLQVPS PAPQQAKKSR RGPRSRSSQY  180
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT ALAAARAYDR AAIKFRGIDA DINFHINEYE  240
EDMTQVKNLS KEEFIHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL  300
FDNEVEAARA YDKAAIKCNG REAVTNFDPS IYGTDISLEA RDEASGHNLD LNLWVSPTTD  360
SQKGNDNVQK MDMCFTACEL PSEKRLKVQT RVPACMGGHT GVSKHYPIWP TSSMYSGFIP  420
NYEGIAMGKE GASVVPLNSA WQVQMLRGHG VSLQLPVSVS STAASSGFSS SSNNKAFHHD  480
ASILMPTPGG ISSPHYFTNQ NG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	6e-93	AP2 family protein