PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991326.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 93aa    MW: 10632.9 Da    PI: 8.5468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.6e-0820601554
                    HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                    +i    ++L++l+P++   ++s K+s + +L+++++YI+sL
  XP_024991326.1 20 QIAGLVSKLQQLIPHNIhTTHSDKVSASRVLQETCNYIRSL 60
                    56666789*******77699*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    
MSSRRSRSRQ PRVSRISDDQ IAGLVSKLQQ LIPHNIHTTH SDKVSASRVL QETCNYIRSL  60
HREVDDLSER LSELLQSTDT NSAEADIIRS LFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.19e-34bHLH family protein