PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991342.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 362aa    MW: 41101.2 Da    PI: 5.2151
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-0689112226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C  G +CkF+H+
  XP_024991342.1  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                     6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MPPKQSKAEV AKKQKVVEDK TFGLKNKNKS KTVQKYVHAL QLNVQPKPDA SKLAAKKKKD  60
EEKAREKELN DLFKIAVVQP KVPAGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDIFSDKRD DEGTMEDWDL EMLEKVVESK GKEYNQNKPT DIVCKHFLDA VEKKQYGWFW  180
VCPNGNKECH YRHALPPGYI LKSQMKALLE EEANKLAIED EIEDQRAKVK TTTPMTTDLF  240
MDWKQKKVDE KEAGLAAQRA DRAKNDRMSG RELFLADASL FVDDAEAYEK YHREEEPDNS  300
TQKAQESSST SGPSTSTSIV AVSEEGNSEM DDDDDDDLDL DELNELEASL SRTSIQIREP  360
GK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-143C3H family protein